/*   Copyright (C) 2011 Wolfgang Hankeln, Norma J. Wendel
 *
 *   This file is part of CDinFusion.
 *
 *   CDinFusion is free software: you can redistribute it and/or
 *   modify it under the terms of the GNU Lesser General Public 
 *   License in version 3 (LGPL3) as published by the Free Software
 *   Foundation version 3 of the License.
 *
 *   CDinFusion is distributed in the hope that it will be useful,
 *   but WITHOUT ANY WARRANTY; without even the implied warranty of
 *   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
 *   Lesser General Public License for more details.
 *
 *   You should have received a copy of the Lesser General Public
 *   License along with CDinFusion; see the file COPYING. If not,
 *   write to the Free Software Foundation, 59 Temple Place - Suite 330,
 *   Boston, MA 02111-1307, USA or see <http://www.gnu.org/licenses/>.
 *   
 *   If you have any questions, send an email to: megx@mpi-bremen.de.
 */
package org.cdinfusion.data.environment.generator;

import org.cdinfusion.data.environment.Environment;
import org.cdinfusion.data.environment.Human_vaginal;

public final class Human_vaginalFastaHeaderGeneratorForEnvironment implements
		FastaHeaderGeneratorForEnvironment {

	public String generateFastaHeader(final Environment env) {

		final Human_vaginal human_vaginal = (Human_vaginal) env;
		final StringBuilder optional = new StringBuilder(100);
		optional.append(" [environmental-sample=TRUE]");
		if (human_vaginal.getGenotype().length() > 0) {
			optional.append(" [genotype=");
			optional.append(human_vaginal.getGenotype());
			optional.append("]");
		}
		optional.append(" [host=homo sapiens]");
		return optional.toString();
	}

}